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A practical advanced guide for technically experienced readers — software/data/ML engineers, technically minded clinicians, researchers crossing from another quantitative field, healthcare-IT professionals — moving into medical imaging → quantitative imaging / radiomics → clinically rigorous ML → imaging informatics → medical imaging AI. It assumes you can code; it does not re-teach Python, Git, or basic ML, and it does not assume prior mastery of DICOM, radiomics, or imaging physics. The common requirement is willingness to work at technical depth.

The book follows the path from scanner and DICOM through geometry, quantitative measurement, modelling, evidence, and clinical deployment. Read it in sequence for the full argument, or enter through the chapter that matches your question.

Where to begin reading

This is a book, not a gated sequence. The chapter map below gives the overall route; the overview pages and cross-links provide a way to move through a topic at the depth you need.

The chapters at a glance

Each chapter has an overview that introduces its argument and points to deeper sections, references, and companion material. This is a reading map, not a mandatory linear pipeline: informatics supports data handling across stages; AI may contribute to reconstruction, segmentation, or analysis; geometry and measurement checks can require revisiting earlier choices. The 3D Slicer companion supports visual inspection of images, geometry, and segmentations.

# Chapter Entry point
1 CT image formation/reconstruction CT foundations
2 MRI signal/contrast/reconstruction MRI foundations
3 DICOM objects/identity/stored meaning DICOM meaning
4 physical geometry/segmentation/resampling Spatial correctness
5 quantitative measurement Measurement foundations
6 radiomics as measurement Feature meaning
7 statistical learning / validation Model evaluation
8 medical imaging AI Imaging AI systems
9 evidence/claims Evidence and inference
10 imaging informatics Information systems
11 clinical deployment Real-world use

Read the chapters in this order for a coherent path, or use the entry points to move directly to a problem. Optional self-checks and hands-on activities are invitations to test understanding, not gates to the material.

How does TRACE-CT fit in?

TRACE-CT is the practical laboratory: a real project whose DICOM, radiomics and validation work is first-class learning material here. Many sections end with a TRACE-CT connection — a real script or dataset that makes the concept concrete. Treat it as worked examples and an evidence-generating project, not a gate.

Where to find things

© 2026 Adrian Tkacz · BioMedical-IT
Original text and figures are licensed under the Creative Commons Attribution-NonCommercial 4.0 International License (CC BY-NC 4.0), unless otherwise noted. Please credit Adrian Tkacz / BioMedical-IT and link to the original source. Third-party materials retain their respective rights and licenses.